pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.
Bioconductor version: 3.23 · Package version: 1.40.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides per-exon and per-gene read counts computed for selected genes from RNA-seq data that were presented in the article "Conservation of an RNA regulatory map between Drosophila and mammals" by Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub 2010 Oct 4, PMID: 20921232. The experiment studied the effect of RNAi knockdown of Pasilla, the Drosophila melanogaster ortholog of mammalian NOVA1 and NOVA2, on the transcriptome. The package vignette describes how the data provided here were derived from the RNA-Seq read sequence data that are provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pasilla")Details
| Maintainer | Alejandro Reyes <alejandro.reyes.ds@gmail.com> |
| Author | Wolfgang Huber, Alejandro Reyes |
| License | LGPL |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Drosophila_melanogaster_Data, ExperimentData, Genome, RNASeqData |
| Package Short Url | https://bioconductor.org/packages/pasilla/ |
Citation
From within R, enter citation("pasilla"):
Wolfgang Huber, Alejandro Reyes. pasilla: Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011. doi:10.18129/B9.bioc.pasilla, R package version 1.40.0, https://bioconductor.org/packages/pasilla.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | pasilla_1.40.0.tar.gz |
Reverse dependencies
Imports Me (1): blacksheepr
Suggests Me (9): BADER, DEXSeq, EnhancedVolcano, gsean, pasillaBamSubset, regionReport, ReportingTools, tidybulk, tidyprint