gpaExample

DOI: 10.18129/B9.bioc.gpaExample    

Example data for the GPA package (Genetic analysis incorporating Pleiotropy and Annotation)

Bioconductor version: Release (3.12)

Example data for the GPA package, consisting of the p-values of 1,219,805 SNPs for five psychiatric disorder GWAS from the psychiatric GWAS consortium (PGC), with the annotation data using genes preferentially expressed in the central nervous system (CNS).

Author: Dongjun Chung, Carter Allen

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("gpaExample")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gpaExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, Homo_sapiens_Data, SNPData
Version 1.1.0
License GPL (>= 2)
Depends R (>= 4.0.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://dongjunchung.github.io/GPA/
Depends On Me
Imports Me
Suggests Me GPA
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gpaExample_1.1.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/gpaExample
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gpaExample
Package Short Url https://bioconductor.org/packages/gpaExample/
Package Downloads Report Download Stats

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