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TimerQuant

Timer Quantification


Bioconductor version: Release (3.18)

Supplementary Data package for tandem timer methods paper by Barry et al. (2015) including TimerQuant shiny applications.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("TimerQuant")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TimerQuant")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TimerQuant")
Supplementary Methods - automatic generation of paper figures PDF R Script
Supplementary Methods - mathematical derivations PDF R Script
Reference Manual PDF

Details

biocViews Danio_rerio_Data, ExperimentData, HighThroughputImagingData, Tissue
Version 1.32.0
License Artistic-2.0
Depends shiny
Imports ggplot2, grid, gridExtra, deSolve, dplyr, locfit
System Requirements
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Suggests BiocStyle, reshape2, knitr, shinyBS
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TimerQuant_1.32.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TimerQuant
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TimerQuant
Package Short Url https://bioconductor.org/packages/TimerQuant/
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