XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
Extra SNP locations for Homo sapiens (dbSNP Build 144)
Bioconductor version: 3.23 · Package version: 0.99.12
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")Details
| Maintainer | H. Pages <hpages@fhcrc.org> |
| Author | Herve Pages |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs |
| Package Short Url | https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37/ |
Citation
From within R, enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"):
Herve Pages. XtraSNPlocs.Hsapiens.dbSNP144.GRCh37: Extra SNP locations for Homo sapiens (dbSNP Build 144). doi:10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, R package version 0.99.12, https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz |
Dependencies
Depends: R (>= 2.10), BSgenome
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37
Reverse dependencies
Imports Me (1): appreci8R