XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
This is the released version of XtraSNPlocs.Hsapiens.dbSNP144.GRCh37; for the devel version, see XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.
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3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1
Extra SNP locations for Homo sapiens (dbSNP Build 144)
Bioconductor version: 3.23 · Package version: 0.99.12
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation
From within R, enter citation("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"):
Herve Pages. XtraSNPlocs.Hsapiens.dbSNP144.GRCh37: Extra SNP locations for Homo sapiens (dbSNP Build 144). doi:10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, R package version 0.99.12, https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 0.99.12 |
| License | Artistic-2.0 |
| Last updated | 2015-08-01 |
| In Bioconductor since | BioC 3.1 (R-3.2) (11 years) |
| Downloads rank | 736 of 928 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs |
| Package Short Url | https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP144.GRCh37/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.10), BSgenome
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37
Reverse dependencies
Imports Me (1): appreci8R