JASPAR2022
Data package for JASPAR database (version 2022)
Bioconductor version: 3.23 · Package version: 0.99.8
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("JASPAR2022")Details
| Maintainer | Damir Baranasic <damir.baranasic@lms.mrc.ac.uk> |
| Author | Damir Baranasic [aut, cre] (<https://orcid.org/0000-0001-5948-0932>) |
| License | GPL-2 |
| URL | http://jaspar.genereg.net/ |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, AnnotationHub, FunctionalAnnotation |
| Package Short Url | https://bioconductor.org/packages/JASPAR2022/ |
Citation
From within R, enter citation("JASPAR2022"):
Damir Baranasic. JASPAR2022: Data package for JASPAR database (version 2022). doi:10.18129/B9.bioc.JASPAR2022, R package version 0.99.8, https://bioconductor.org/packages/JASPAR2022.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | JASPAR2022_0.99.8.tar.gz |
Dependencies
Depends: R (>= 4.1.0), methods, BiocFileCache, utils
Suggests: knitr, rmarkdown, BiocStyle, TFBSTools (>= 1.31.2)
Reverse dependencies
Suggests Me (1): GRaNIE