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Predict Combined Function of Transcription Factors

Bioconductor version: Release (3.19)

Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013) . Extend the algorithm to predict the combined function of two DNA-binding elements from comprable binding and expression data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at>

Citation (from within R, enter citation("target")):


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Using target to predict combined binding HTML R Script
Using the target package HTML R Script
Reference Manual PDF


biocViews Software, StatisticalMethod, Transcription
Version 1.18.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 3.6)
Imports BiocGenerics, GenomicRanges, IRanges, matrixStats, methods, stats, graphics, shiny
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Suggests testthat (>= 2.1.0), knitr, rmarkdown, shinytest, shinyBS, covr
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