To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("synergyfinder")

In most cases, you don't need to download the package archive at all.

synergyfinder

 

   

Calculate and Visualize Synergy Scores for Drug Combinations

Bioconductor version: Release (3.5)

Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.

Author: Liye He <liye.he at helsinki.fi>, Jing Tang <jing.tang at helsinki.fi>

Maintainer: Liye He <liye.he at helsinki.fi>

Citation (from within R, enter citation("synergyfinder")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("synergyfinder")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("synergyfinder")

 

PDF R Script synergyfinder
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Statistical Method
Version 1.2.0
In Bioconductor since BioC 3.4 (R-3.3) (0.5 years)
License Artistic License 2.0
Depends
Imports drc (>= 2.5-12), reshape2 (>= 1.4.1), kriging (>= 1.1), ggplot2 (>= 2.1.0), gridBase (>= 0.4-7), grid (>= 3.2.4), lattice (>= 0.20-33), gplots (>= 3.0.0), nleqslv (>= 3.0), stats (>= 3.3.0), graphics (>= 3.3.0), grDevices (>= 3.3.0)
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source synergyfinder_1.2.0.tar.gz
Windows Binary synergyfinder_1.2.0.zip
Mac OS X 10.11 (El Capitan) synergyfinder_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/synergyfinder/tree/release-3.5
Package Short Url http://bioconductor.org/packages/synergyfinder/
Package Downloads Report Download Stats

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