To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("synergyfinder")

In most cases, you don't need to download the package archive at all.

synergyfinder

DOI: 10.18129/B9.bioc.synergyfinder    

Calculate and Visualize Synergy Scores for Drug Combinations

Bioconductor version: Release (3.6)

Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.

Author: Liye He <liye.he at helsinki.fi>, Jing Tang <jing.tang at helsinki.fi>

Maintainer: Liye He <liye.he at helsinki.fi>

Citation (from within R, enter citation("synergyfinder")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("synergyfinder")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("synergyfinder")

 

PDF R Script synergyfinder
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Statistical Method
Version 1.4.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License Artistic License 2.0
Depends
Imports drc (>= 2.5-12), reshape2 (>= 1.4.1), SpatialExtremes (>= 2.0-2), ggplot2 (>= 2.1.0), gridBase (>= 0.4-7), grid (>= 3.2.4), lattice (>= 0.20-33), gplots (>= 3.0.0), nleqslv (>= 3.0), stats (>= 3.3.0), graphics (>= 3.3.0), grDevices (>= 3.3.0)
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package synergyfinder_1.4.0.tar.gz
Windows Binary synergyfinder_1.4.0.zip
Mac OS X 10.11 (El Capitan) synergyfinder_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/synergyfinder
Package Short Url http://bioconductor.org/packages/synergyfinder/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: