sangerseqR
Tools for Sanger Sequencing Data in R
Bioconductor version: 3.23 · Package version: 1.48.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sangerseqR")Details
| Maintainer | Jonathon Hill <jhill@byu.edu> |
| Author | Jonathon T. Hill, Bradley Demarest |
| License | GPL-2 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | SNP, Sequencing, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/sangerseqR/ |
Citation
From within R, enter citation("sangerseqR"):
Jonathon T. Hill, Bradley Demarest. sangerseqR: Tools for Sanger Sequencing Data in R. doi:10.18129/B9.bioc.sangerseqR, R package version 1.48.0, https://bioconductor.org/packages/sangerseqR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | sangerseqR_1.48.0.tar.gz |
| Windows binary (x86_64) | sangerseqR_1.48.0.zip |
| macOS binary (arm64) | sangerseqR_1.48.0.tgz |
| macOS binary (x86_64) | sangerseqR_1.48.0.tgz |
Dependencies
Depends: R (>= 3.5.0), Biostrings, pwalign, stringr
Imports: methods, shiny
Suggests: BiocStyle, knitr, RUnit, BiocGenerics
Reverse dependencies
Depends On Me (1): sangeranalyseR
Imports Me (1): scifer
Suggests Me (1): CrispRVariants