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reconsi

Resampling Collapsed Null Distributions for Simultaneous Inference


Bioconductor version: Release (3.18)

Improves simultaneous inference under dependence of tests by estimating a collapsed null distribution through resampling. Accounting for the dependence between tests increases the power while reducing the variability of the false discovery proportion. This dependence is common in genomics applications, e.g. when combining flow cytometry measurements with microbiome sequence counts.

Author: Stijn Hawinkel [cre, aut]

Maintainer: Stijn Hawinkel <stijn.hawinkel at psb.ugent.be>

Citation (from within R, enter citation("reconsi")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("reconsi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("reconsi")
Manual for the RCM pacakage HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews FlowCytometry, Metagenomics, Microbiome, MultipleComparison, Software
Version 1.14.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL-2
Depends
Imports phyloseq, ks, reshape2, ggplot2, stats, methods, graphics, grDevices, matrixStats, Matrix
System Requirements
URL
Bug Reports https://github.com/CenterForStatistics-UGent/reconsi/issues
See More
Suggests knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package reconsi_1.14.0.tar.gz
Windows Binary reconsi_1.14.0.zip
macOS Binary (x86_64) reconsi_1.14.0.tgz
macOS Binary (arm64) reconsi_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/reconsi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/reconsi
Bioc Package Browser https://code.bioconductor.org/browse/reconsi/
Package Short Url https://bioconductor.org/packages/reconsi/
Package Downloads Report Download Stats