reconsi

DOI: 10.18129/B9.bioc.reconsi    

This is the development version of reconsi; to use it, please install the devel version of Bioconductor.

Resampling Collapsed Null Distributions for Simultaneous Inference

Bioconductor version: Development (3.11)

Improves simultaneous inference under dependence of tests by estimating a collapsed null distribution through resampling. Accounting for the dependence between tests increases the power while reducing the variability of the false discovery proportion. This dependence is common in genomics applications, e.g. when combining flow cytometry measurements with microbiome sequence counts.

Author: Stijn Hawinkel <stijn.hawinkel at ugent.be>

Maintainer: Joris Meys <joris.meys at ugent.be>

Citation (from within R, enter citation("reconsi")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("reconsi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("reconsi")

 

HTML R Script Manual for the RCM pacakage
PDF   Reference Manual
Text   NEWS

Details

biocViews FlowCytometry, Metagenomics, Microbiome, MultipleComparison, Software
Version 0.99.5
In Bioconductor since BioC 3.11 (R-4.0)
License GPL-2
Depends
Imports phyloseq, KernSmooth, reshape2, ggplot2, stats, methods, MASS, graphics, grDevices
LinkingTo
Suggests knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
BugReports https://github.com/CenterForStatistics-UGent/reconsi/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package reconsi_0.99.5.tar.gz
Windows Binary reconsi_0.99.5.zip
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/reconsi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/reconsi
Package Short Url https://bioconductor.org/packages/reconsi/
Package Downloads Report Download Stats

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