Welcome to the new bioconductor.org!

proteasy

Protease Mapping


Bioconductor version: Release (3.18)

Retrieval of experimentally derived protease- and cleavage data derived from the MEROPS database. Proteasy contains functions for mapping peptide termini to known sites where a protease cleaves. This package also makes it possible to quickly look up known substrates based on a list of (potential) proteases, or vice versa - look up proteases based on a list of substrates.

Author: Martin Rydén [aut, cre]

Maintainer: Martin Rydén <martin.ryden at med.lu.se>

Citation (from within R, enter citation("proteasy")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("proteasy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews BiomedicalInformatics, FunctionalGenomics, Proteomics, Software
Version 1.4.0
In Bioconductor since BioC 3.16 (R-4.2) (1.5 years)
License GPL-3
Depends R (>= 4.2.0)
Imports data.table, stringr, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86, EnsDb.Mmusculus.v79, EnsDb.Rnorvegicus.v79, Rcpi, methods, utils
System Requirements
URL https://github.com/martinry/proteasy
Bug Reports https://github.com/martinry/proteasy/issues
See More
Suggests BiocStyle, knitr, rmarkdown, igraph, ComplexHeatmap, viridis
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary proteasy_1.4.0.zip
macOS Binary (x86_64) proteasy_1.4.0.tgz
macOS Binary (arm64) proteasy_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/proteasy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/proteasy
Bioc Package Browser https://code.bioconductor.org/browse/proteasy/
Package Short Url https://bioconductor.org/packages/proteasy/
Package Downloads Report Download Stats