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onlineFDR

Online error rate control


Bioconductor version: Release (3.18)

This package allows users to control the false discovery rate (FDR) or familywise error rate (FWER) for online multiple hypothesis testing, where hypotheses arrive in a stream. In this framework, a null hypothesis is rejected based on the evidence against it and on the previous rejection decisions.

Author: David S. Robertson [aut, cre], Lathan Liou [aut], Aaditya Ramdas [aut], Adel Javanmard [ctb], Andrea Montanari [ctb], Jinjin Tian [ctb], Tijana Zrnic [ctb], Natasha A. Karp [aut]

Maintainer: David S. Robertson <david.robertson at mrc-bsu.cam.ac.uk>

Citation (from within R, enter citation("onlineFDR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("onlineFDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("onlineFDR")
Advanced usage of onlineFDR HTML R Script
The theory behind onlineFDR HTML R Script
Using the onlineFDR package HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews MultipleComparison, Software, StatisticalMethod
Version 2.10.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3
Depends
Imports stats, Rcpp, progress
System Requirements
URL https://dsrobertson.github.io/onlineFDR/index.html
See More
Suggests knitr, rmarkdown, testthat, covr
Linking To Rcpp, RcppProgress
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package onlineFDR_2.10.0.tar.gz
Windows Binary onlineFDR_2.10.0.zip
macOS Binary (x86_64) onlineFDR_2.10.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/onlineFDR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/onlineFDR
Bioc Package Browser https://code.bioconductor.org/browse/onlineFDR/
Package Short Url https://bioconductor.org/packages/onlineFDR/
Package Downloads Report Download Stats