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ncdfFlow

ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.


Bioconductor version: Release (3.18)

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

Author: Mike Jiang,Greg Finak,N. Gopalakrishnan

Maintainer: Mike Jiang <mike at ozette.com>

Citation (from within R, enter citation("ncdfFlow")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncdfFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncdfFlow")
Basic Functions for Flow Cytometry Data PDF R Script
Reference Manual PDF
README Text
NEWS Text
LICENSE Text

Details

biocViews FlowCytometry, ImmunoOncology, Software
Version 2.48.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License AGPL-3.0-only
Depends R (>= 2.14.0), flowCore(>= 1.51.7), methods, BH
Imports Biobase, BiocGenerics, flowCore, zlibbioc
System Requirements
URL
See More
Suggests testthat, parallel, flowStats, knitr
Linking To cpp11, BH, Rhdf5lib
Enhances
Depends On Me ggcyto
Imports Me flowStats, flowWorkspace, openCyto
Suggests Me COMPASS, cydar
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncdfFlow_2.48.0.tar.gz
Windows Binary ncdfFlow_2.48.0.zip
macOS Binary (x86_64) ncdfFlow_2.48.0.tgz
macOS Binary (arm64) ncdfFlow_2.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ncdfFlow
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncdfFlow
Bioc Package Browser https://code.bioconductor.org/browse/ncdfFlow/
Package Short Url https://bioconductor.org/packages/ncdfFlow/
Package Downloads Report Download Stats