Registration Open for Bioc2024 July 24-26


Exploratory Data Analysis of LC-MS/MS data by spectral counts

Bioconductor version: Release (3.19)

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Author: Josep Gregori, Alex Sanchez, and Josep Villanueva

Maintainer: Josep Gregori <josep.gregori at>

Citation (from within R, enter citation("msmsEDA")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

msmsEDA: Batch effects detection in LC-MSMS experiments PDF R Script
Reference Manual PDF


biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.42.0
In Bioconductor since BioC 2.13 (R-3.0) (11 years)
License GPL-2
Depends R (>= 3.0.1), MSnbase
Imports MASS, gplots, RColorBrewer
System Requirements
See More
Linking To
Depends On Me msmsTests
Imports Me
Suggests Me Harman, RforProteomics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msmsEDA_1.42.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) msmsEDA_1.42.0.tgz
macOS Binary (arm64) msmsEDA_1.42.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats