levi
Landscape Expression Visualization Interface
Bioconductor version: 3.23 · Package version: 1.30.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("levi")Details
| Maintainer | Jose Luiz Rybarczyk Filho <jose.luiz@unesp.br> |
| Author | Rafael Pilan [aut], Isabelle Silva [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths] |
| License | GPL (>= 2) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Network, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/levi/ |
Citation
From within R, enter citation("levi"):
Rafael Pilan. levi: Landscape Expression Visualization Interface. doi:10.18129/B9.bioc.levi, R package version 1.30.0, https://bioconductor.org/packages/levi.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | levi_1.30.0.tar.gz |
| Windows binary (x86_64) | levi_1.30.0.zip |
| macOS binary (arm64) | levi_1.30.0.tgz |
| macOS binary (x86_64) | levi_1.30.0.tgz |
Dependencies
Imports: DT (>= 0.4), RColorBrewer (>= 1.1-2), colorspace (>= 1.3-2), dplyr (>= 0.7.4), ggplot2 (>= 2.2.1), httr (>= 1.3.1), igraph (>= 1.2.1), reshape2 (>= 1.4.3), shiny (>= 1.0.5), shinydashboard (>= 0.7.0), shinyjs (>= 1.0), xml2 (>= 1.2.0), knitr, Rcpp (>= 0.12.18), grid, grDevices, stats, utils, testthat, methods, rmarkdown
LinkingTo: Rcpp