levi

This is the released version of levi; for the devel version, see levi.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Landscape Expression Visualization Interface

Bioconductor version: Release (3.23)

The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.

Author: Rafael Pilan [aut], Isabelle Silva [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>

Citation (from within R, enter citation("levi")):

Rafael Pilan. levi: Landscape Expression Visualization Interface. doi:10.18129/B9.bioc.levi, R package version 1.30.0, https://bioconductor.org/packages/levi.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("levi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("levi")

"Using levi"	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, Network, Sequencing, Software
Version	1.30.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	GPL (>= 2)
Depends
Imports	DT (>= 0.4), RColorBrewer (>= 1.1-2), colorspace (>= 1.3-2), dplyr (>= 0.7.4), ggplot2 (>= 2.2.1), httr (>= 1.3.1), igraph (>= 1.2.1), reshape2 (>= 1.4.3), shiny (>= 1.0.5), shinydashboard (>= 0.7.0), shinyjs (>= 1.0), xml2 (>= 1.2.0), knitr, Rcpp (>= 0.12.18), grid, grDevices, stats, utils, testthat, methods, rmarkdown
System Requirements
URL

Suggests	rmarkdown, BiocStyle
Linking To	Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	levi_1.30.0.tar.gz
Windows Binary (x86_64)	levi_1.30.0.zip
macOS Binary (big-sur-x86_64)	levi_1.30.0.tgz
macOS Binary (sonoma-arm64)	levi_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/levi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/levi
Package Short Url	https://bioconductor.org/packages/levi/
Package Downloads Report	Download Stats