les
Identifying Differential Effects in Tiling Microarray Data
Bioconductor version: Release (3.19)
The 'les' package estimates Loci of Enhanced Significance (LES) in tiling microarray data. These are regions of regulation such as found in differential transcription, CHiP-chip, or DNA modification analysis. The package provides a universal framework suitable for identifying differential effects in tiling microarray data sets, and is independent of the underlying statistics at the level of single probes.
Author: Julian Gehring, Clemens Kreutz, Jens Timmer
Maintainer: Julian Gehring <jg-bioc at gmx.com>
citation("les")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("les")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("les")
Introduction to the les package: Identifying Differential Effects in Tiling Microarray Data with the Loci of Enhanced Significance Framework | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ChIPchip, DNAMethylation, DifferentialExpression, Microarray, Software, Transcription |
Version | 1.54.0 |
In Bioconductor since | BioC 2.7 (R-2.12) (14 years) |
License | GPL-3 |
Depends | R (>= 2.13.2), methods, graphics, fdrtool |
Imports | boot, gplots, RColorBrewer |
System Requirements | |
URL |
See More
Suggests | Biobase, limma |
Linking To | |
Enhances | parallel |
Depends On Me | |
Imports Me | GSRI |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | les_1.54.0.tar.gz |
Windows Binary | les_1.54.0.zip |
macOS Binary (x86_64) | les_1.54.0.tgz |
macOS Binary (arm64) | les_1.54.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/les |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/les |
Bioc Package Browser | https://code.bioconductor.org/browse/les/ |
Package Short Url | https://bioconductor.org/packages/les/ |
Package Downloads Report | Download Stats |