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A SummarizedExperiment for Ivy-GAP data

Bioconductor version: Release (3.19)

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at>

Citation (from within R, enter citation("ivygapSE")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

ivygapSE -- SummarizedExperiment for Ivy-GAP HTML R Script
Reference Manual PDF


biocViews GeneExpression, Sequencing, Software, Survival, Transcription, Visualization
Version 1.26.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), SummarizedExperiment
Imports shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR
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Suggests knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown, BiocStyle, magick, statmod, codetools
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Follow Installation instructions to use this package in your R session.

Source Package ivygapSE_1.26.0.tar.gz
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macOS Binary (x86_64) ivygapSE_1.26.0.tgz
macOS Binary (arm64) ivygapSE_1.26.0.tgz
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Source Repository (Developer Access) git clone
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