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Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: Release (3.19)

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at>

Citation (from within R, enter citation("iCOBRA")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

iCOBRA User Guide HTML R Script
Reference Manual PDF


biocViews Classification, Software, Visualization
Version 1.32.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>=2)
Depends R (>= 4.4.0)
Imports shiny (>=, shinydashboard, shinyBS, reshape2, ggplot2 (>= 3.4.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, markdown, utils, rlang
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Follow Installation instructions to use this package in your R session.

Source Package iCOBRA_1.32.0.tar.gz
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macOS Binary (x86_64) iCOBRA_1.32.0.tgz
macOS Binary (arm64) iCOBRA_1.32.0.tgz
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