hdxmsqc
An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments
Bioconductor version: Release (3.19)
The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.
Author: Oliver M. Crook [aut, cre]
Maintainer: Oliver M. Crook <oliver.crook at stats.ox.ac.uk>
citation("hdxmsqc")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hdxmsqc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hdxmsqc")
Qualityt control for differential hydrogen deuterium exchange mass spectrometry data | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataImport, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software |
Version | 1.0.1 |
In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
License | file LICENSE |
Depends | R (>= 4.3), QFeatures, S4Vectors, Spectra |
Imports | dplyr, tidyr, ggplot2, BiocStyle, knitr, methods, grDevices, stats, MsCoreUtils |
System Requirements | |
URL | http://github.com/ococrook/hdxmsqc |
Bug Reports | https://github.com/ococrook/hdxmsqc/issues |
See More
Suggests | RColorBrewer, pheatmap, MASS, patchwork, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | hdxmsqc_1.0.1.tar.gz |
Windows Binary | hdxmsqc_1.0.1.zip |
macOS Binary (x86_64) | hdxmsqc_1.0.1.tgz |
macOS Binary (arm64) | hdxmsqc_1.0.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/hdxmsqc |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hdxmsqc |
Bioc Package Browser | https://code.bioconductor.org/browse/hdxmsqc/ |
Package Short Url | https://bioconductor.org/packages/hdxmsqc/ |
Package Downloads Report | Download Stats |