ggmanh
Visualization Tool for GWAS Result
Bioconductor version: 3.23 · Package version: 1.16.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggmanh")Details
| Maintainer | John Lee <swannyy.stat@gmail.com> |
| Author | John Lee [aut, cre], John Lee [aut] (AbbVie), Xiuwen Zheng [ctb, dtc] |
| License | MIT + file LICENSE |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Genetics, GenomeWideAssociation, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/ggmanh/ |
Citation
From within R, enter citation("ggmanh"):
John Lee, John Lee. ggmanh: Visualization Tool for GWAS Result. doi:10.18129/B9.bioc.ggmanh, R package version 1.16.0, https://bioconductor.org/packages/ggmanh.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ggmanh_1.16.0.tar.gz |
| Windows binary (x86_64) | ggmanh_1.16.0.zip |
| macOS binary (arm64) | ggmanh_1.16.0.tgz |
| macOS binary (x86_64) | ggmanh_1.16.0.tgz |
Dependencies
Depends: methods, ggplot2
Imports: gdsfmt, ggrepel, grDevices, paletteer, RColorBrewer, rlang, scales, SeqArray (>= 1.32.0), stats, tidyr, dplyr, pals, magrittr
Suggests: BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0), GenomicRanges