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KEGG pathway visualization by ggplot2

Bioconductor version: Release (3.18)

This package aims to import, parse, and analyze KEGG data such as KEGG PATHWAY and KEGG MODULE. The package supports visualizing KEGG information using ggplot2 and ggraph through using the grammar of graphics. The package enables the direct visualization of the results from various omics analysis packages.

Author: Noriaki Sato [cre, aut]

Maintainer: Noriaki Sato <nori at hgc.jp>

Citation (from within R, enter citation("ggkegg")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

ggkegg HTML R Script
Reference Manual PDF


biocViews DataImport, KEGG, Pathways, Software
Version 1.0.13
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.3.0), ggplot2, ggraph, XML, igraph, tidygraph
Imports BiocFileCache, GetoptLong, data.table, dplyr, magick, patchwork, shadowtext, stringr, tibble, org.Hs.eg.db, methods, utils, stats, AnnotationDbi, grDevices, gtable
System Requirements
URL https://github.com/noriakis/ggkegg
Bug Reports https://github.com/noriakis/ggkegg/issues
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Suggests knitr, clusterProfiler, bnlearn, rmarkdown, BiocStyle, testthat (>= 3.0.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggkegg_1.0.13.tar.gz
Windows Binary ggkegg_1.0.13.zip (64-bit only)
macOS Binary (x86_64) ggkegg_1.0.13.tgz
macOS Binary (arm64) ggkegg_1.0.13.tgz
Source Repository git clone https://git.bioconductor.org/packages/ggkegg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggkegg
Bioc Package Browser https://code.bioconductor.org/browse/ggkegg/
Package Short Url https://bioconductor.org/packages/ggkegg/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive