epiNEM
epiNEM
Bioconductor version: 3.23 · Package version: 1.36.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
epiNEM is an extension of the original Nested Effects Models (NEM). EpiNEM is able to take into account double knockouts and infer more complex network signalling pathways. It is tailored towards large scale double knock-out screens.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epiNEM")Details
| Maintainer | Martin Pirkl <martinpirkl@yahoo.de> |
| Author | Madeline Diekmann & Martin Pirkl |
| License | GPL-3 |
| URL | https://github.com/cbg-ethz/epiNEM/ |
| Bug Reports | https://github.com/cbg-ethz/epiNEM/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Network, NetworkInference, Pathways, Software, SystemsBiology |
| Package Short Url | https://bioconductor.org/packages/epiNEM/ |
Citation
From within R, enter citation("epiNEM"):
Madeline Diekmann & Martin Pirkl. epiNEM: epiNEM. doi:10.18129/B9.bioc.epiNEM, R package version 1.36.0, https://bioconductor.org/packages/epiNEM.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | epiNEM_1.36.0.tar.gz |
| Windows binary (x86_64) | epiNEM_1.35.0.zip |
| macOS binary (arm64) | epiNEM_1.36.0.tgz |
| macOS binary (x86_64) | epiNEM_1.36.0.tgz |
Dependencies
Depends: R (>= 4.1)
Imports: BoutrosLab.plotting.general, BoolNet, e1071, gtools, stats, igraph, utils, lattice, latticeExtra, RColorBrewer, pcalg, minet, grDevices, graph, mnem, latex2exp
Suggests: knitr, RUnit, BiocGenerics, STRINGdb, devtools, rmarkdown, GOSemSim, AnnotationHub, org.Sc.sgd.db, BiocStyle