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divergence

Divergence: Functionality for assessing omics data by divergence with respect to a baseline


Bioconductor version: Release (3.18)

This package provides functionality for performing divergence analysis as presented in Dinalankara et al, "Digitizing omics profiles by divergence from a baseline", PANS 2018. This allows the user to simplify high dimensional omics data into a binary or ternary format which encapsulates how the data is divergent from a specified baseline group with the same univariate or multivariate features.

Author: Wikum Dinalankara <wdd4001 at med.cornell.edu>, Luigi Marchionni <marchion at jhu.edu>, Qian Ke <qke1 at jhu.edu>

Maintainer: Wikum Dinalankara <wdd4001 at med.cornell.edu>, Luigi Marchionni <marchion at jhu.edu>

Citation (from within R, enter citation("divergence")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("divergence")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("divergence")
Performing Divergence Analysis HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews Software, StatisticalMethod
Version 1.18.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-2
Depends R (>= 3.6), SummarizedExperiment
Imports
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Suggests knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package divergence_1.18.0.tar.gz
Windows Binary divergence_1.18.0.zip
macOS Binary (x86_64) divergence_1.18.0.tgz
macOS Binary (arm64) divergence_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/divergence
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/divergence
Bioc Package Browser https://code.bioconductor.org/browse/divergence/
Package Short Url https://bioconductor.org/packages/divergence/
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