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cliProfiler

A package for the CLIP data visualization


Bioconductor version: Release (3.18)

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Author: You Zhou [aut, cre] , Kathi Zarnack [aut]

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("cliProfiler")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cliProfiler")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cliProfiler")
cliProfiler Vignettes HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Epigenetics, Genetics, Sequencing, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License Artistic-2.0
Depends S4Vectors, methods, R (>= 4.1)
Imports dplyr, rtracklayer, GenomicRanges, ggplot2, BSgenome, Biostrings, utils
System Requirements
URL https://github.com/Codezy99/cliProfiler
Bug Reports https://github.com/Codezy99/cliProfiler/issues
See More
Suggests knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cliProfiler_1.8.0.tar.gz
Windows Binary cliProfiler_1.8.0.zip
macOS Binary (x86_64) cliProfiler_1.8.0.tgz
macOS Binary (arm64) cliProfiler_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cliProfiler
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cliProfiler
Bioc Package Browser https://code.bioconductor.org/browse/cliProfiler/
Package Short Url https://bioconductor.org/packages/cliProfiler/
Package Downloads Report Download Stats