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cghMCR

Find chromosome regions showing common gains/losses


Bioconductor version: Release (3.18)

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("cghMCR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cghMCR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")
cghMCR findMCR PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.60.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL
Depends methods, DNAcopy, CNTools, limma
Imports BiocGenerics(>= 0.1.6), stats4
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cghMCR_1.60.0.tar.gz
Windows Binary cghMCR_1.60.0.zip (64-bit only)
macOS Binary (x86_64) cghMCR_1.60.0.tgz
macOS Binary (arm64) cghMCR_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cghMCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cghMCR
Bioc Package Browser https://code.bioconductor.org/browse/cghMCR/
Package Short Url https://bioconductor.org/packages/cghMCR/
Package Downloads Report Download Stats