cellxgenedp
Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal
Bioconductor version: 3.23 · Package version: 1.16.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cellxgenedp")Details
| Maintainer | Martin Morgan <mtmorgan.bioc@gmail.com> |
| Author | Martin Morgan [aut, cre] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Kayla Interdonato [aut] |
| License | Artistic-2.0 |
| URL | https://mtmorgan.github.io/cellxgenedp/, https://github.com/mtmorgan/cellxgenedp |
| Bug Reports | https://github.com/mtmorgan/cellxgenedp/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, SingleCell, Software, ThirdPartyClient |
| Package Short Url | https://bioconductor.org/packages/cellxgenedp/ |
Citation
From within R, enter citation("cellxgenedp"):
Martin Morgan, Kayla Interdonato. cellxgenedp: Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal. doi:10.18129/B9.bioc.cellxgenedp, R package version 1.16.0, https://bioconductor.org/packages/cellxgenedp.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | cellxgenedp_1.16.0.tar.gz |
| Windows binary (x86_64) | cellxgenedp_1.16.0.zip |
| macOS binary (arm64) | cellxgenedp_1.16.0.tgz |
| macOS binary (x86_64) | cellxgenedp_1.16.0.tgz |