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Automated functions for comparing various omic data from

Bioconductor version: Release (3.19)

This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on

Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]

Maintainer: Arman Shahrisa <shahrisa.arman at>

Citation (from within R, enter citation("cbaf")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

cbaf HTML R Script
Reference Manual PDF


biocViews AssayDomain, BiomedicalInformatics, ComparativeGenomics, DNAMethylation, Epigenetics, GeneExpression, Genetics, Microarray, ResearchField, Software, Transcription, Transcriptomics
Version 1.26.3
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 4.1)
Imports BiocFileCache, RColorBrewer, cBioPortalData, genefilter, gplots, grDevices, stats, utils, openxlsx
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Suggests knitr, rmarkdown, BiocStyle
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Follow Installation instructions to use this package in your R session.

Source Package cbaf_1.26.3.tar.gz
Windows Binary
macOS Binary (x86_64) cbaf_1.26.3.tgz
macOS Binary (arm64) cbaf_1.26.3.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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