cbaf
Automated functions for comparing various omic data from cbioportal.org
Bioconductor version: 3.23 · Package version: 1.34.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cbaf")Details
| Maintainer | Arman Shahrisa <shahrisa.arman@hotmail.com> |
| Author | Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut] |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | AssayDomain, BiomedicalInformatics, ComparativeGenomics, DNAMethylation, Epigenetics, GeneExpression, Genetics, Microarray, ResearchField, Software, Transcription, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/cbaf/ |
Citation
From within R, enter citation("cbaf"):
Arman Shahrisa, Maryam Tahmasebi Birgani. cbaf: Automated functions for comparing various omic data from cbioportal.org. doi:10.18129/B9.bioc.cbaf, R package version 1.34.0, https://bioconductor.org/packages/cbaf.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | cbaf_1.34.0.tar.gz |
| Windows binary (x86_64) | cbaf_1.34.0.zip |
| macOS binary (arm64) | cbaf_1.34.0.tgz |
| macOS binary (x86_64) | cbaf_1.34.0.tgz |
Dependencies
Depends: R (>= 4.1)
Imports: BiocFileCache, RColorBrewer, cBioPortalData, genefilter, gplots, grDevices, stats, utils, openxlsx, zip