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canceR

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC


Bioconductor version: Release (3.18)

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("canceR")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("canceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("canceR")
canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, GO, GUI, GeneExpression, GeneSetEnrichment, KEGG, MultipleComparison, Software
Version 1.36.5
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends R (>= 4.3), tcltk, cBioPortalData
Imports GSEABase, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, tidyr, graphics, stats, utils, grDevices, R.oo, R.methodsS3
System Requirements Tktable, BWidget
URL
Bug Reports https://github.com/kmezhoud/canceR/issues
See More
Suggests testthat (>= 3.1), knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package canceR_1.36.5.tar.gz
Windows Binary canceR_1.36.5.zip (64-bit only)
macOS Binary (x86_64) canceR_1.36.5.tgz
macOS Binary (arm64) canceR_1.36.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/canceR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/canceR
Bioc Package Browser https://code.bioconductor.org/browse/canceR/
Package Short Url https://bioconductor.org/packages/canceR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive