biodbUniprot

DOI: 10.18129/B9.bioc.biodbUniprot    

biodbUniprot, a library for connecting to the Uniprot Database

Bioconductor version: Release (3.14)

The biodbUniprot library is an extension of the biodb framework package. It provides access to the UniProt database. It allows to retrieve entries by their accession number, and run web service queries for searching for entries.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbUniprot")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbUniprot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbUniprot")

 

HTML R Script Introduction to the biodbUniprot package.
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License AGPL-3
Depends R (>= 4.1.0)
Imports R6, biodb(>= 1.1.10)
LinkingTo
Suggests BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr, covr
SystemRequirements
Enhances
URL https://github.com/pkrog/biodbUniprot
BugReports https://github.com/pkrog/biodbUniprot/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbUniprot_1.0.0.tar.gz
Windows Binary biodbUniprot_1.0.0.zip
macOS 10.13 (High Sierra) biodbUniprot_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbUniprot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbUniprot
Package Short Url https://bioconductor.org/packages/biodbUniprot/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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