biodbNci

DOI: 10.18129/B9.bioc.biodbNci    

biodbNci, a library for connecting to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database

Bioconductor version: Release (3.15)

The biodbNci library is an extension of the biodb framework package. It provides access to biodbNci, a library for connecting to the National Cancer Institute (USA) CACTUS Database. It allows to retrieve entries by their accession number, and run specific web services.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbNci")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbNci")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbNci")

 

HTML R Script Introduction to the biodbNci package.
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.15 (R-4.2) (< 6 months)
License AGPL-3
Depends R (>= 4.1)
Imports biodb(>= 1.3.1), R6, Rcpp, chk
LinkingTo Rcpp, testthat
Suggests roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbNci_1.0.0.tar.gz
Windows Binary biodbNci_1.0.0.zip (64-bit only)
macOS Binary (x86_64) biodbNci_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbNci
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbNci
Package Short Url https://bioconductor.org/packages/biodbNci/
Package Downloads Report Download Stats

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