beachmat.tiledb
beachmat bindings for TileDB-backed matrices
Bioconductor version: 3.23 · Package version: 1.4.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Extends beachmat to initialize tatami matrices from TileDB-backed arrays. This allows C++ code in downstream packages to directly call the TileDB C/C++ library to access array data, without the need for block processing via DelayedArray. Developers only need to import this package to automatically extend the capabilities of beachmat::initializeCpp to TileDBArray instances.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("beachmat.tiledb")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre] |
| License | GPL-3 |
| URL | https://github.com/tatami-inc/beachmat.tiledb |
| Bug Reports | https://github.com/tatami-inc/beachmat.tiledb/issues |
| System Requirements | C++17 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/beachmat.tiledb/ |
Citation
From within R, enter citation("beachmat.tiledb"):
Aaron Lun. beachmat.tiledb: beachmat bindings for TileDB-backed matrices. doi:10.18129/B9.bioc.beachmat.tiledb, R package version 1.4.0, https://bioconductor.org/packages/beachmat.tiledb.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | beachmat.tiledb_1.4.0.tar.gz |
| macOS binary (arm64) | beachmat.tiledb_1.4.0.tgz |
| macOS binary (x86_64) | beachmat.tiledb_1.4.0.tgz |
Dependencies
Imports: methods, beachmat, tiledb, TileDBArray, DelayedArray, Rcpp
LinkingTo: Rcpp, assorthead, beachmat