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beachmat.tiledb

This is the released version of beachmat.tiledb; for the devel version, see beachmat.tiledb.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21

beachmat bindings for TileDB-backed matrices


Bioconductor version: Release (3.23)

Extends beachmat to initialize tatami matrices from TileDB-backed arrays. This allows C++ code in downstream packages to directly call the TileDB C/C++ library to access array data, without the need for block processing via DelayedArray. Developers only need to import this package to automatically extend the capabilities of beachmat::initializeCpp to TileDBArray instances.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("beachmat.tiledb")):

Aaron Lun. beachmat.tiledb: beachmat bindings for TileDB-backed matrices. doi:10.18129/B9.bioc.beachmat.tiledb, R package version 1.4.0, https://bioconductor.org/packages/beachmat.tiledb.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beachmat.tiledb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat.tiledb")
User guide HTML R Script
Reference ManualPDF
NEWSText
Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software
Version1.4.0
In Bioconductor sinceBioC 3.21 (R-4.5) (1.5 years)
License GPL-3
Depends
Imports methods, beachmat, tiledb, TileDBArray, DelayedArray, Rcpp
System RequirementsC++17
URLhttps://github.com/tatami-inc/beachmat.tiledb
Bug Reportshttps://github.com/tatami-inc/beachmat.tiledb/issues
See More
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix
Linking To Rcpp, assorthead, beachmat
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beachmat.tiledb_1.4.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64) beachmat.tiledb_1.4.0.tgz
macOS Binary (sonoma-arm64) beachmat.tiledb_1.4.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/beachmat.tiledb
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/beachmat.tiledb
Package Short Url https://bioconductor.org/packages/beachmat.tiledb/
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