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Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Bioconductor version: Release (3.19)

AbSeq is a comprehensive bioinformatic pipeline for the analysis of sequencing datasets generated from antibody libraries and abseqR is one of its packages. abseqR empowers the users of abseqPy ( with plotting and reporting capabilities and allows them to generate interactive HTML reports for the convenience of viewing and sharing with other researchers. Additionally, abseqR extends abseqPy to compare multiple repertoire analyses and perform further downstream analysis on its output.

Author: JiaHong Fong [cre, aut], Monther Alhamdoosh [aut]

Maintainer: JiaHong Fong <jiahfong at>

Citation (from within R, enter citation("abseqR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Introduction to abseqR PDF R Script
Reference Manual PDF


biocViews MultipleComparison, QualityControl, ReportWriting, Sequencing, Software, Visualization
Version 1.22.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3 | file LICENSE
Depends R (>= 3.5.0)
Imports ggplot2, RColorBrewer, circlize, reshape2, VennDiagram, plyr, flexdashboard, BiocParallel(>= 1.1.25), png, grid, gridExtra, rmarkdown, knitr, vegan, ggcorrplot, ggdendro, plotly, BiocStyle, stringr, utils, methods, grDevices, stats, tools, graphics
System Requirements pandoc (>=
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Follow Installation instructions to use this package in your R session.

Source Package abseqR_1.22.0.tar.gz
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macOS Binary (x86_64) abseqR_1.22.0.tgz
macOS Binary (arm64) abseqR_1.22.0.tgz
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