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Advanced package of tensor decomposition based unsupervised feature extraction

Bioconductor version: Release (3.19)

This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. In contrast to TDbasedUFE which can perform simple the feature selection and the multiomics analyses, this package can perform more complicated and advanced features, but they are not so popularly required. Only users who require more specific features can make use of its functionality.

Author: Y-h. Taguchi [aut, cre]

Maintainer: Y-h. Taguchi <tag at>

Citation (from within R, enter citation("TDbasedUFEadv")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Enrichment HTML R Script
Explanation of TDbasedUFEadv HTML R Script
How to use TDbasedUFEadv HTML R Script
Reference Manual PDF


biocViews FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version 1.4.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License GPL-3
Imports TDbasedUFE, Biobase, GenomicRanges, utils, rTensor, methods, graphics, RTCGA, stats, enrichplot, DOSE, STRINGdb, enrichR, hash, shiny
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Suggests knitr, rmarkdown, testthat (>= 3.0.0), RTCGA.rnaseq, RTCGA.clinical, BiocStyle, MOFAdata
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TDbasedUFEadv_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64) TDbasedUFEadv_1.4.0.tgz
macOS Binary (arm64) TDbasedUFEadv_1.4.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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Old Source Packages for BioC 3.19 Source Archive