TADCompare
TADCompare: Identification and characterization of differential TADs
Bioconductor version: 3.23 · Package version: 1.22.2
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
TADCompare is an R package designed to identify and characterize differential Topologically Associated Domains (TADs) between multiple Hi-C contact matrices. It contains functions for finding differential TADs between two datasets, finding differential TADs over time and identifying consensus TADs across multiple matrices. It takes all of the main types of HiC input and returns simple, comprehensive, easy to analyze results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TADCompare")Details
| Maintainer | Mikhail Dozmorov <mikhail.dozmorov@gmail.com> |
| Author | Mikhail Dozmorov [aut, cre] (ORCID: <https://orcid.org/0000-0002-0086-8358>), Kellen Cresswell [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/dozmorovlab/TADCompare |
| Bug Reports | https://github.com/dozmorovlab/TADCompare/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Clustering, FeatureExtraction, HiC, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/TADCompare/ |
Citation
From within R, enter citation("TADCompare"):
Mikhail Dozmorov, Kellen Cresswell. TADCompare: TADCompare: Identification and characterization of differential TADs. doi:10.18129/B9.bioc.TADCompare, R package version 1.22.2, https://bioconductor.org/packages/TADCompare.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | TADCompare_1.22.2.tar.gz |
| Windows binary (x86_64) | TADCompare_1.22.2.zip |
| macOS binary (arm64) | TADCompare_1.22.2.tgz |
| macOS binary (x86_64) | TADCompare_1.22.2.tgz |