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SQLDataFrame

Representation of SQL database in DataFrame metaphor


Bioconductor version: Release (3.18)

SQLDataFrame is developed to lazily represent and efficiently analyze SQL-based tables in _R_. SQLDataFrame supports common and familiar 'DataFrame' operations such as '[' subsetting, rbind, cbind, etc.. The internal implementation is based on the widely adopted dplyr grammar and SQL commands. In-memory datasets or plain text files (.txt, .csv, etc.) could also be easily converted into SQLDataFrames objects (which generates a new database on-disk).

Author: Qian Liu [aut, cre] , Martin Morgan [aut]

Maintainer: Qian Liu <qian.liu at roswellpark.org>

Citation (from within R, enter citation("SQLDataFrame")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SQLDataFrame")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SQLDataFrame")
SQLDataFrame Internal Implementation HTML R Script
SQLDataFrame: Lazy representation of SQL database in DataFrame metaphor HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.16.1
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 3.6), dplyr (>= 0.8.0.1), dbplyr (>= 1.4.0), S4Vectors(>= 0.33.3)
Imports DBI, lazyeval, methods, tools, stats, BiocGenerics, RSQLite, tibble
System Requirements
URL https://github.com/Bioconductor/SQLDataFrame
Bug Reports https://github.com/Bioconductor/SQLDataFrame/issues
See More
Suggests RMySQL, bigrquery, testthat, knitr, rmarkdown, DelayedArray, GenomicRanges
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SQLDataFrame_1.16.1.tar.gz
Windows Binary SQLDataFrame_1.16.1.zip
macOS Binary (x86_64) SQLDataFrame_1.16.1.tgz
macOS Binary (arm64) SQLDataFrame_1.16.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/SQLDataFrame
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SQLDataFrame
Bioc Package Browser https://code.bioconductor.org/browse/SQLDataFrame/
Package Short Url https://bioconductor.org/packages/SQLDataFrame/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive