SMAD
Statistical Modelling of AP-MS Data (SMAD)
Bioconductor version: 3.23 · Package version: 1.28.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Assigning probability scores to protein interactions captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SMAD")Details
| Maintainer | Qingzhou Zhang <zqzneptune@hotmail.com> |
| Author | Qingzhou Zhang [aut, cre] (ORCID: <https://orcid.org/0000-0001-9540-2624>) |
| License | MIT + file LICENSE |
| URL | https://github.com/zqzneptune/SMAD |
| Bug Reports | https://github.com/zqzneptune/SMAD/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | MassSpectrometry, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/SMAD/ |
Citation
From within R, enter citation("SMAD"):
Qingzhou Zhang. SMAD: Statistical Modelling of AP-MS Data (SMAD). doi:10.18129/B9.bioc.SMAD, R package version 1.28.0, https://bioconductor.org/packages/SMAD.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SMAD_1.28.0.tar.gz |
| Windows binary (x86_64) | SMAD_1.28.0.zip |
| macOS binary (arm64) | SMAD_1.28.0.tgz |
| macOS binary (x86_64) | SMAD_1.28.0.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: data.table, dplyr, magrittr (>= 1.5), Rcpp (>= 1.0.0), RcppAlgos, stats, tidyr, utils
LinkingTo: Rcpp