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SEtools

SEtools: tools for working with SummarizedExperiment

Bioconductor version: 3.23 · Package version: 1.26.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).

DOI: 10.18129/B9.bioc.SEtools

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SEtools")

Details

MaintainerPierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>
AuthorPierre-Luc Germain [cre, aut] (ORCID: <https://orcid.org/0000-0003-3418-4218>)
LicenseGPL
Bug Reportshttps://github.com/plger/SEtools
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsGeneExpression, Software
Package Short Url https://bioconductor.org/packages/SEtools/

Citation

From within R, enter citation("SEtools"):

Pierre-Luc Germain. SEtools: SEtools: tools for working with SummarizedExperiment. doi:10.18129/B9.bioc.SEtools, R package version 1.26.0, https://bioconductor.org/packages/SEtools.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageSEtools_1.26.0.tar.gz
Windows binary (x86_64)SEtools_1.26.0.zip
macOS binary (arm64)SEtools_1.26.0.tgz
macOS binary (x86_64)SEtools_1.26.0.tgz
Dependencies

Depends: R (>= 4.0), SummarizedExperiment, sechm

Imports: BiocParallel, Matrix, DESeq2, S4Vectors, data.table, edgeR, openxlsx, pheatmap, stats, circlize, methods, sva

Suggests: BiocStyle, knitr, rmarkdown, ggplot2