SEtools

DOI: 10.18129/B9.bioc.SEtools    

This is the development version of SEtools; for the stable release version, see SEtools.

SEtools: tools for working with SummarizedExperiment

Bioconductor version: Development (3.11)

This includes a set of tools for working with the SummarizedExperiment class, including merging, melting, aggregation and plotting functions.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("SEtools")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SEtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEtools")

 

HTML R Script SEtools
PDF   Reference Manual

Details

biocViews DataRepresentation, Software, Visualization
Version 1.1.17
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL
Depends R (>= 3.6)
Imports S4Vectors, SummarizedExperiment, data.table, pheatmap, seriation, ComplexHeatmap, circlize, methods, BiocParallel, randomcoloR, edgeR, openxlsx
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, ggplot2
SystemRequirements
Enhances
URL
BugReports https://github.com/plger/SEtools
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SEtools_1.1.17.tar.gz
Windows Binary SEtools_1.1.17.zip
Mac OS X 10.11 (El Capitan) SEtools_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SEtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SEtools
Package Short Url https://bioconductor.org/packages/SEtools/
Package Downloads Report Download Stats

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