Rtpca
Thermal proximity co-aggregation with R
Bioconductor version: Release (3.20)
R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.
Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]
Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>
Citation (from within R, enter
citation("Rtpca")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rtpca")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rtpca")
Introduction to Rtpca | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, Proteomics, Software |
Version | 1.16.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | GPL-3 |
Depends | R (>= 4.0.0), stats, dplyr, tidyr |
Imports | Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble |
System Requirements | |
URL | |
Bug Reports | https://support.bioconductor.org/ |
See More
Suggests | knitr, BiocStyle, TPP, testthat, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Rtpca_1.16.0.tar.gz |
Windows Binary (x86_64) | Rtpca_1.16.0.zip |
macOS Binary (x86_64) | Rtpca_1.16.0.tgz |
macOS Binary (arm64) | Rtpca_1.15.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rtpca |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rtpca |
Bioc Package Browser | https://code.bioconductor.org/browse/Rtpca/ |
Package Short Url | https://bioconductor.org/packages/Rtpca/ |
Package Downloads Report | Download Stats |