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Rtpca

This is the released version of Rtpca; for the devel version, see Rtpca.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Thermal proximity co-aggregation with R


Bioconductor version: Release (3.23)

R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.

Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>

Citation (from within R, enter citation("Rtpca")):

Nils Kurzawa, André Mateus, Mikhail M. Savitski. Rtpca: Thermal proximity co-aggregation with R. doi:10.18129/B9.bioc.Rtpca, R package version 1.22.0, https://bioconductor.org/packages/Rtpca.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rtpca")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtpca")
Introduction to Rtpca HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews DataImport, Proteomics, Software
Version1.22.0
In Bioconductor sinceBioC 3.12 (R-4.0) (6 years)
License GPL-3
Depends R (>= 4.0.0), stats, dplyr, tidyr
Imports Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble
System Requirements
URL
Bug Reportshttps://support.bioconductor.org/
See More
Suggests knitr, BiocStyle, TPP, testthat, rmarkdown
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rtpca_1.22.0.tar.gz
Windows Binary (x86_64) Rtpca_1.22.0.zip
macOS Binary (big-sur-x86_64) Rtpca_1.22.0.tgz
macOS Binary (sonoma-arm64) Rtpca_1.22.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/Rtpca
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/Rtpca
Package Short Url https://bioconductor.org/packages/Rtpca/
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