Rtpca

DOI: 10.18129/B9.bioc.Rtpca    

Thermal proximity co-aggregation with R

Bioconductor version: Release (3.12)

R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.

Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nils.kurzawa at embl.de>

Citation (from within R, enter citation("Rtpca")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rtpca")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtpca")

 

HTML R Script Introduction to Rtpca
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Proteomics, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends R (>= 4.0.0), stats, dplyr, tidyr
Imports Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble
LinkingTo
Suggests knitr, BiocStyle, TPP, testthat
SystemRequirements
Enhances
URL
BugReports https://support.bioconductor.org/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rtpca_1.0.0.tar.gz
Windows Binary Rtpca_1.0.0.zip
macOS 10.13 (High Sierra) Rtpca_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rtpca
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rtpca
Package Short Url https://bioconductor.org/packages/Rtpca/
Package Downloads Report Download Stats

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