RankProd

This is the released version of RankProd; for the devel version, see RankProd.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Rank Product method for identifying differentially expressed genes with application in meta-analysis

Bioconductor version: Release (3.23)

Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

Author: Francesco Del Carratore <francesco.delcarratore at manchester.ac.uk>, Andris Jankevics <andris.jankevics at gmail.com> Fangxin Hong <fxhong at jimmy.harvard.edu>, Ben Wittner <Wittner.Ben at mgh.harvard.edu>, Rainer Breitling <rainer.breitling at manchester.ac.uk>, and Florian Battke <battke at informatik.uni-tuebingen.de>

Maintainer: Francesco Del Carratore <francescodc87 at gmail.com>

Citation (from within R, enter citation("RankProd")):

Francesco Del Carratore, Andris Jankevics Fangxin Hong, Ben Wittner, Rainer Breitling, and Florian Battke. RankProd: Rank Product method for identifying differentially expressed genes with application in meta-analysis. doi:10.18129/B9.bioc.RankProd, R package version 3.38.0, https://bioconductor.org/packages/RankProd.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RankProd")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RankProd")

RankProd Tutorial	PDF	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, GeneExpression, GeneSignaling, Lipidomics, Metabolomics, Microarray, Proteomics, ResearchField, Software, StatisticalMethod, SystemsBiology
Version	3.38.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	file LICENSE
Depends	R (>= 3.2.1), stats, methods, Rmpfr, gmp
Imports	graphics
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	tRanslatome
Imports Me	mslp, POMA, synlet
Suggests Me	pepdiff
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RankProd_3.38.0.tar.gz
Windows Binary (x86_64)	RankProd_3.38.0.zip
macOS Binary (big-sur-x86_64)	RankProd_3.38.0.tgz
macOS Binary (sonoma-arm64)	RankProd_3.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RankProd
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RankProd
Package Short Url	https://bioconductor.org/packages/RankProd/
Package Downloads Report	Download Stats