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RandomWalkRestartMH

This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RandomWalkRestartMH.

Random walk with restart on multiplex and heterogeneous Networks


Bioconductor version: Release (3.19)

This package performs Random Walk with Restart on multiplex and heterogeneous networks. It is described in the following article: "Random Walk With Restart On Multiplex And Heterogeneous Biological Networks" .

Author: Alberto Valdeolivas [cre, aut, ctb]

Maintainer: Alberto Valdeolivas <alvaldeolivas at gmail.com>

Citation (from within R, enter citation("RandomWalkRestartMH")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RandomWalkRestartMH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews BioCarta, BiomedicalInformatics, GenePrediction, GraphAndNetwork, KEGG, MathematicalBiology, Network, NetworkInference, Pathways, Reactome, Software, SomaticMutation, SystemsBiology
Version 1.24.0
In Bioconductor since BioC 3.7 (R-3.5) (6.5 years)
License GPL (>= 2)
Depends R (>= 3.5.0)
Imports igraph, Matrix, dnet, methods
System Requirements
URL https://github.com/alberto-valdeolivas/RandomWalkRestartMH
Bug Reports https://github.com/alberto-valdeolivas/RandomWalkRestartMH/issues
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Suggests BiocStyle, knitr, rmarkdown, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RandomWalkRestartMH
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RandomWalkRestartMH
Package Short Url https://bioconductor.org/packages/RandomWalkRestartMH/
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