RCyjs

This is the released version of RCyjs; for the devel version, see RCyjs.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Display and manipulate graphs in cytoscape.js

Bioconductor version: Release (3.23)

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js, using websockets.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("RCyjs")):

Paul Shannon. RCyjs: Display and manipulate graphs in cytoscape.js. doi:10.18129/B9.bioc.RCyjs, R package version 2.34.0, https://bioconductor.org/packages/RCyjs.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RCyjs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCyjs")

RCyjs: interactive network visualization using cytoscape.js	HTML	R Script
Reference Manual	PDF
README	Text
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version	2.34.0
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.5.0), BrowserViz (>= 2.7.18), graph (>= 1.56.0)
Imports	methods, httpuv (>= 1.5.0), BiocGenerics, base64enc, utils
System Requirements
URL

Suggests	RUnit, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RCyjs_2.34.0.tar.gz
Windows Binary (x86_64)	RCyjs_2.34.0.zip
macOS Binary (big-sur-x86_64)	RCyjs_2.34.0.tgz
macOS Binary (sonoma-arm64)	RCyjs_2.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RCyjs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RCyjs
Package Short Url	https://bioconductor.org/packages/RCyjs/
Package Downloads Report	Download Stats