PanomiR
Detection of miRNAs that regulate interacting groups of pathways
Bioconductor version: 3.23 · Package version: 1.16.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
PanomiR is a package to detect miRNAs that target groups of pathways from gene expression data. This package provides functionality for generating pathway activity profiles, determining differentially activated pathways between user-specified conditions, determining clusters of pathways via the PCxN package, and generating miRNAs targeting clusters of pathways. These function can be used separately or sequentially to analyze RNA-Seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PanomiR")Details
| Maintainer | Pourya Naderi <pouryany@gmail.com> |
| Author | Pourya Naderi [aut, cre], Yue Yang (Alan) Teo [aut], Ilya Sytchev [aut], Winston Hide [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/pouryany/PanomiR |
| Bug Reports | https://github.com/pouryany/PanomiR/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, GeneSetEnrichment, GeneTarget, Pathways, Software, miRNA |
| Package Short Url | https://bioconductor.org/packages/PanomiR/ |
Citation
From within R, enter citation("PanomiR"):
Pourya Naderi, Yue Yang Teo, Ilya Sytchev, Winston Hide. PanomiR: Detection of miRNAs that regulate interacting groups of pathways. doi:10.18129/B9.bioc.PanomiR, R package version 1.16.0, https://bioconductor.org/packages/PanomiR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | PanomiR_1.16.0.tar.gz |
| Windows binary (x86_64) | PanomiR_1.16.0.zip |
| macOS binary (arm64) | PanomiR_1.16.0.tgz |
| macOS binary (x86_64) | PanomiR_1.16.0.tgz |
Dependencies
Depends: R (>= 4.2.0)
Imports: clusterProfiler, dplyr, forcats, GSEABase, igraph, limma, metap, org.Hs.eg.db, parallel, preprocessCore, RColorBrewer, rlang, tibble, withr, utils
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown