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NOISeq

Exploratory analysis and differential expression for RNA-seq data


Bioconductor version: Release (3.18)

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

Author: Sonia Tarazona, Pedro Furio-Tari, Maria Jose Nueda, Alberto Ferrer and Ana Conesa

Maintainer: Sonia Tarazona <sotacam at eio.upv.es>

Citation (from within R, enter citation("NOISeq")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NOISeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NOISeq")
NOISeq User's Guide PDF R Script
QCreport.pdf PDF
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization
Version 2.46.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License Artistic-2.0
Depends R (>= 2.13.0), methods, Biobase(>= 2.13.11), splines (>= 3.0.1), Matrix (>= 1.2)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me metaSeq
Imports Me benchdamic, CNVPanelizer, ExpHunterSuite
Suggests Me compcodeR, GeoTcgaData
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NOISeq_2.46.0.tar.gz
Windows Binary NOISeq_2.46.0.zip (64-bit only)
macOS Binary (x86_64) NOISeq_2.46.0.tgz
macOS Binary (arm64) NOISeq_2.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/NOISeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NOISeq
Bioc Package Browser https://code.bioconductor.org/browse/NOISeq/
Package Short Url https://bioconductor.org/packages/NOISeq/
Package Downloads Report Download Stats