MetaVolcanoR

DOI: 10.18129/B9.bioc.MetaVolcanoR    

Gene Expression Meta-analysis Visualization Tool

Bioconductor version: Release (3.10)

MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.

Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]

Maintainer: Cesar Prada <cesar.prada at usp.br>

Citation (from within R, enter citation("MetaVolcanoR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaVolcanoR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaVolcanoR")

 

HTML R Script MetaVolcanoR inputs: differential expression examples
HTML R Script MetaVolcanoR: Differential expression meta-analysis tool
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 1.0.1
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-3
Depends R (>= 3.6.0)
Imports methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaVolcanoR_1.0.1.tar.gz
Windows Binary MetaVolcanoR_1.0.1.zip
Mac OS X 10.11 (El Capitan) MetaVolcanoR_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaVolcanoR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaVolcanoR
Package Short Url https://bioconductor.org/packages/MetaVolcanoR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive

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