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Classification of Helicobacter Pylori Genomes

Bioconductor version: Release (3.19)

To classify Helicobacter pylori genomes according to genetic distance from nine reference populations. The nine reference populations are hpgpAfrica, hpgpAfrica-distant, hpgpAfroamerica, hpgpEuroamerica, hpgpMediterranea, hpgpEurope, hpgpEurasia, hpgpAsia, and hpgpAklavik86-like. The vertex populations are Africa, Europe and Asia.

Author: William Wheeler [aut, cre], Difei Wang [aut], Isaac Zhao [aut], Yumi Jin [aut], Charles Rabkin [aut]

Maintainer: William Wheeler <wheelerb at>

Citation (from within R, enter citation("GrafGen")):


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GrafGen: Classifying H. pylori genomes HTML R Script
Reference Manual PDF


biocViews Classification, Genetics, GenomeAnnotation, Software
Version 1.0.0
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License GPL-2
Depends R (>= 4.3.0)
Imports stats, utils, graphics, ggplot2, plotly, zlibbioc, scales, RColorBrewer, dplyr, grDevices, GenomicRanges, shiny, cowplot, ggpubr, stringr, rlang
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Source Package GrafGen_1.0.0.tar.gz
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