GloScope
Population-level Representation on scRNA-Seq data
Bioconductor version: Release (3.19)
This package aims at representing and summarizing the entire single-cell profile of a sample. It allows researchers to perform important bioinformatic analyses at the sample-level such as visualization and quality control. The main functions Estimate sample distribution and calculate statistical divergence among samples, and visualize the distance matrix through MDS plots.
Author: William Torous [aut, cre] , Hao Wang [aut] , Elizabeth Purdom [aut], Boying Gong [aut]
Maintainer: William Torous <wtorous at berkeley.edu>
citation("GloScope")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GloScope")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GloScope")
GloScope | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataRepresentation, QualityControl, RNASeq, Sequencing, SingleCell, Software |
Version | 1.2.1 |
In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
License | Artistic-2.0 |
Depends | R (>= 4.4.0) |
Imports | utils, stats, MASS, mclust, ggplot2, RANN, FNN, BiocParallel, mvnfast, SingleCellExperiment, rlang |
System Requirements | |
URL | |
Bug Reports | https://github.com/epurdom/GloScope/issues |
See More
Suggests | BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, zellkonverter |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GloScope_1.2.1.tar.gz |
Windows Binary | GloScope_1.2.1.zip |
macOS Binary (x86_64) | GloScope_1.2.1.tgz |
macOS Binary (arm64) | GloScope_1.2.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GloScope |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GloScope |
Bioc Package Browser | https://code.bioconductor.org/browse/GloScope/ |
Package Short Url | https://bioconductor.org/packages/GloScope/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |