GloScope

DOI: 10.18129/B9.bioc.GloScope  

Population-level Representation on scRNA-Seq data

Bioconductor version: Release (3.18)

This package aims at representing and summarizing the entire single-cell profile of a sample. It allows researchers to perform important bioinformatic analyses at the sample-level such as visualization and quality control. The main functions Estimate sample distribution and calculate statistical divergence among samples, and visualize the distance matrix through MDS plots.

Author: William Torous [aut, cre] , Hao Wang [aut] , Elizabeth Purdom [aut], Boying Gong [aut]

Maintainer: William Torous <wtorous at berkeley.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GloScope")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GloScope")

 

HTML	R Script	GloScope
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, QualityControl, RNASeq, Sequencing, SingleCell, Software
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.3.0)
Imports	utils, stats, MASS, mclust, ggplot2, RANN, FNN, BiocParallel, mvnfast, SingleCellExperiment, rlang
LinkingTo
Suggests	BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, zellkonverter
SystemRequirements
Enhances
URL
BugReports	https://github.com/epurdom/GloScope/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GloScope_1.0.0.tar.gz
Windows Binary	GloScope_1.0.0.zip
macOS Binary (x86_64)	GloScope_1.0.0.tgz
macOS Binary (arm64)	GloScope_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GloScope
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GloScope
Bioc Package Browser	https://code.bioconductor.org/browse/GloScope/
Package Short Url	https://bioconductor.org/packages/GloScope/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive